Scientific name | Plecoglossus altivelis |
Common name | Ayu |
Maximum lifespan | 3.00 years (Plecoglossus altivelis@AnAge) |
Total mtDNA (size: 16542 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 8377 | 8165 | 5120 | 3257 | 4304 | 3861 |
Base content per 1 kb (bases) | 506 | 494 | 310 | 197 | 260 | 233 |
Base content (%) | 50.6% | 49.4% |
Total protein-coding genes (size: 11413 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 5918 | 5495 | 3790 | 2128 | 3117 | 2378 |
Base content per 1 kb (bases) | 519 | 481 | 332 | 186 | 273 | 208 |
Base content (%) | 51.9% | 48.1% |
D-loop (size: 857 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 351 | 506 | 204 | 147 | 252 | 254 |
Base content per 1 kb (bases) | 410 | 590 | 238 | 172 | 294 | 296 |
Base content (%) | 41.0% | 59.0% |
Total tRNA-coding genes (size: 1557 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 741 | 816 | 403 | 338 | 370 | 446 |
Base content per 1 kb (bases) | 476 | 524 | 259 | 217 | 238 | 286 |
Base content (%) | 47.6% | 52.4% |
Total rRNA-coding genes (size: 2658 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 1329 | 1329 | 701 | 628 | 557 | 772 |
Base content per 1 kb (bases) | 500 | 500 | 264 | 236 | 210 | 290 |
Base content (%) | 50.0% | 50.0% |
12S rRNA gene (size: 945 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 481 | 464 | 254 | 227 | 202 | 262 |
Base content per 1 kb (bases) | 509 | 491 | 269 | 240 | 214 | 277 |
Base content (%) | 50.9% | 49.1% |
16S rRNA gene (size: 1713 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 848 | 865 | 447 | 401 | 355 | 510 |
Base content per 1 kb (bases) | 495 | 505 | 261 | 234 | 207 | 298 |
Base content (%) | 49.5% | 50.5% |
ATP6 (size: 684 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 354 | 330 | 247 | 107 | 189 | 141 |
Base content per 1 kb (bases) | 518 | 482 | 361 | 156 | 276 | 206 |
Base content (%) | 51.8% | 48.2% |
ATP8 (size: 168 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 78 | 90 | 55 | 23 | 45 | 45 |
Base content per 1 kb (bases) | 464 | 536 | 327 | 137 | 268 | 268 |
Base content (%) | 46.4% | 53.6% |
COX1 (size: 1551 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 768 | 783 | 467 | 301 | 439 | 344 |
Base content per 1 kb (bases) | 495 | 505 | 301 | 194 | 283 | 222 |
Base content (%) | 49.5% | 50.5% |
COX2 (size: 691 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 350 | 341 | 221 | 129 | 173 | 168 |
Base content per 1 kb (bases) | 507 | 493 | 320 | 187 | 250 | 243 |
Base content (%) | 50.7% | 49.3% |
COX3 (size: 786 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 407 | 379 | 249 | 158 | 217 | 162 |
Base content per 1 kb (bases) | 518 | 482 | 317 | 201 | 276 | 206 |
Base content (%) | 51.8% | 48.2% |
CYTB (size: 1141 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 577 | 564 | 368 | 209 | 339 | 225 |
Base content per 1 kb (bases) | 506 | 494 | 323 | 183 | 297 | 197 |
Base content (%) | 50.6% | 49.4% |
ND1 (size: 975 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 516 | 459 | 327 | 189 | 289 | 170 |
Base content per 1 kb (bases) | 529 | 471 | 335 | 194 | 296 | 174 |
Base content (%) | 52.9% | 47.1% |
ND2 (size: 1051 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 568 | 483 | 377 | 191 | 297 | 186 |
Base content per 1 kb (bases) | 540 | 460 | 359 | 182 | 283 | 177 |
Base content (%) | 54.0% | 46.0% |
ND3 (size: 349 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 183 | 166 | 111 | 72 | 112 | 54 |
Base content per 1 kb (bases) | 524 | 476 | 318 | 206 | 321 | 155 |
Base content (%) | 52.4% | 47.6% |
ND4 (size: 1381 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 727 | 654 | 456 | 271 | 364 | 290 |
Base content per 1 kb (bases) | 526 | 474 | 330 | 196 | 264 | 210 |
Base content (%) | 52.6% | 47.4% |
ND4L (size: 297 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 166 | 131 | 112 | 54 | 78 | 53 |
Base content per 1 kb (bases) | 559 | 441 | 377 | 182 | 263 | 178 |
Base content (%) | 55.9% | 44.1% |
ND5 (size: 1839 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 926 | 913 | 602 | 324 | 515 | 398 |
Base content per 1 kb (bases) | 504 | 496 | 327 | 176 | 280 | 216 |
Base content (%) | 50.4% | 49.6% |
ND6 (size: 522 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 304 | 218 | 202 | 102 | 65 | 153 |
Base content per 1 kb (bases) | 582 | 418 | 387 | 195 | 125 | 293 |
Base content (%) | 58.2% | 41.8% |
ATP6 (size: 684 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
8 | 9 | 4 | 14 | 18 | 10 | 7 | 4 | 6 | 3 | 5 | 6 | 4 | 1 | 4 | 9 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
5 | 0 | 0 | 3 | 13 | 2 | 1 | 1 | 7 | 1 | 2 | 6 | 9 | 2 | 0 | 7 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
5 | 7 | 3 | 0 | 2 | 2 | 0 | 0 | 4 | 0 | 3 | 2 | 1 | 1 | 8 | 0 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
3 | 1 | 3 | 0 | 1 | 0 | 1 | 0 | 4 | 1 | 1 | 0 | 0 | 1 | 0 | 3 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
51 | 84 | 62 | 31 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
26 | 62 | 31 | 109 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
30 | 101 | 48 | 49 |
ATP8 (size: 168 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: MPQLNPAPWFAILVFSWLVFLTVIPPKVLGHVFSNEPTVQSAEKTNPESWNWPWH* | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
0 | 2 | 0 | 1 | 2 | 1 | 1 | 0 | 2 | 0 | 3 | 2 | 1 | 0 | 1 | 3 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
1 | 0 | 0 | 2 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 4 | 2 | 2 | 0 | 1 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
1 | 1 | 0 | 2 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 4 | 0 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
2 | 2 | 1 | 0 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 5 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
13 | 17 | 13 | 13 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
7 | 17 | 14 | 18 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
3 | 21 | 18 | 14 |
COX1 (size: 1551 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
15 | 27 | 6 | 20 | 13 | 16 | 11 | 2 | 3 | 5 | 14 | 8 | 10 | 7 | 13 | 29 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
18 | 0 | 1 | 16 | 20 | 10 | 2 | 5 | 13 | 13 | 15 | 10 | 10 | 8 | 0 | 9 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
14 | 10 | 2 | 6 | 13 | 5 | 1 | 1 | 4 | 4 | 14 | 2 | 1 | 4 | 11 | 0 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
19 | 11 | 0 | 3 | 11 | 7 | 1 | 2 | 1 | 4 | 1 | 0 | 0 | 1 | 0 | 15 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
158 | 123 | 129 | 107 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
77 | 136 | 94 | 210 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
66 | 208 | 121 | 122 |
COX2 (size: 691 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
7 | 13 | 5 | 8 | 10 | 6 | 2 | 2 | 6 | 2 | 3 | 11 | 3 | 3 | 2 | 6 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
7 | 0 | 2 | 4 | 7 | 5 | 2 | 1 | 2 | 2 | 4 | 3 | 9 | 2 | 0 | 2 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
4 | 1 | 1 | 5 | 7 | 0 | 1 | 0 | 3 | 3 | 6 | 2 | 0 | 0 | 5 | 5 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
5 | 9 | 5 | 1 | 12 | 5 | 0 | 1 | 2 | 2 | 1 | 0 | 0 | 0 | 0 | 3 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
74 | 64 | 53 | 39 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
25 | 53 | 64 | 88 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
30 | 104 | 51 | 45 |
COX3 (size: 786 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
6 | 8 | 3 | 9 | 14 | 2 | 3 | 2 | 5 | 3 | 6 | 5 | 5 | 3 | 8 | 17 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
4 | 0 | 2 | 5 | 7 | 6 | 3 | 1 | 9 | 5 | 7 | 2 | 7 | 2 | 1 | 7 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
11 | 4 | 2 | 4 | 2 | 4 | 0 | 1 | 2 | 4 | 7 | 1 | 1 | 0 | 1 | 3 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
14 | 4 | 6 | 1 | 4 | 0 | 2 | 0 | 2 | 2 | 1 | 0 | 0 | 1 | 0 | 11 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
77 | 70 | 51 | 64 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
44 | 67 | 55 | 96 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
37 | 112 | 56 | 57 |
CYTB (size: 1141 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
12 | 17 | 2 | 24 | 15 | 9 | 8 | 6 | 2 | 3 | 6 | 17 | 3 | 3 | 8 | 24 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
8 | 1 | 2 | 10 | 16 | 3 | 2 | 4 | 10 | 5 | 7 | 6 | 10 | 2 | 2 | 3 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
9 | 5 | 2 | 6 | 7 | 7 | 2 | 1 | 1 | 2 | 10 | 3 | 0 | 0 | 17 | 2 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
10 | 3 | 4 | 1 | 10 | 5 | 5 | 2 | 0 | 2 | 4 | 0 | 0 | 0 | 0 | 10 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
104 | 101 | 87 | 88 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
52 | 92 | 74 | 162 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
53 | 175 | 64 | 88 |
ND1 (size: 975 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
11 | 11 | 0 | 19 | 20 | 7 | 6 | 6 | 1 | 6 | 6 | 8 | 3 | 5 | 12 | 6 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
8 | 0 | 1 | 10 | 16 | 5 | 4 | 3 | 7 | 2 | 6 | 7 | 13 | 4 | 0 | 5 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
14 | 0 | 0 | 6 | 9 | 3 | 0 | 1 | 3 | 1 | 11 | 4 | 5 | 4 | 7 | 0 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
4 | 2 | 9 | 0 | 4 | 2 | 5 | 2 | 2 | 2 | 2 | 0 | 0 | 1 | 0 | 4 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
90 | 95 | 71 | 69 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
39 | 96 | 57 | 133 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
60 | 136 | 42 | 87 |
ND2 (size: 1051 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
11 | 14 | 4 | 22 | 20 | 8 | 9 | 4 | 6 | 6 | 3 | 5 | 2 | 0 | 9 | 5 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
9 | 0 | 2 | 17 | 22 | 3 | 6 | 2 | 11 | 2 | 6 | 8 | 8 | 1 | 1 | 9 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
19 | 6 | 1 | 5 | 20 | 6 | 1 | 1 | 3 | 1 | 5 | 10 | 3 | 3 | 5 | 3 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
3 | 1 | 3 | 1 | 0 | 1 | 8 | 0 | 3 | 0 | 1 | 0 | 0 | 0 | 0 | 2 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
84 | 99 | 94 | 73 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
43 | 133 | 46 | 128 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
64 | 145 | 46 | 95 |
ND3 (size: 1051 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
11 | 14 | 4 | 22 | 20 | 8 | 9 | 4 | 6 | 6 | 3 | 5 | 2 | 0 | 9 | 5 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
9 | 0 | 2 | 17 | 22 | 3 | 6 | 2 | 11 | 2 | 6 | 8 | 8 | 1 | 1 | 9 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
19 | 6 | 1 | 5 | 20 | 6 | 1 | 1 | 3 | 1 | 5 | 10 | 3 | 3 | 5 | 3 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
3 | 1 | 3 | 1 | 0 | 1 | 8 | 0 | 3 | 0 | 1 | 0 | 0 | 0 | 0 | 2 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
84 | 99 | 94 | 73 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
43 | 133 | 46 | 128 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
64 | 145 | 46 | 95 |
ND4 (size: 1381 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
16 | 18 | 5 | 25 | 26 | 16 | 14 | 4 | 4 | 8 | 3 | 9 | 4 | 4 | 6 | 9 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
17 | 2 | 3 | 7 | 19 | 15 | 3 | 4 | 10 | 5 | 8 | 6 | 15 | 5 | 1 | 6 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
19 | 9 | 3 | 7 | 10 | 3 | 3 | 2 | 6 | 2 | 12 | 10 | 8 | 1 | 10 | 2 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
9 | 6 | 6 | 0 | 5 | 4 | 5 | 1 | 3 | 5 | 2 | 0 | 0 | 0 | 0 | 10 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
108 | 142 | 121 | 89 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
71 | 131 | 74 | 184 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
92 | 183 | 95 | 90 |
ND4L (size: 297 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
1 | 3 | 1 | 4 | 9 | 4 | 3 | 0 | 2 | 0 | 0 | 0 | 1 | 0 | 1 | 5 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
4 | 1 | 2 | 5 | 9 | 1 | 0 | 0 | 3 | 2 | 1 | 1 | 1 | 0 | 0 | 2 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
4 | 2 | 0 | 1 | 4 | 1 | 1 | 2 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 1 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
3 | 2 | 1 | 1 | 0 | 0 | 0 | 1 | 2 | 1 | 0 | 0 | 0 | 1 | 0 | 1 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
26 | 32 | 21 | 20 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
17 | 32 | 13 | 37 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
11 | 48 | 19 | 21 |
ND5 (size: 1839 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
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Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
18 | 25 | 7 | 25 | 41 | 15 | 6 | 5 | 10 | 9 | 13 | 9 | 4 | 3 | 20 | 22 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
19 | 2 | 4 | 16 | 32 | 10 | 5 | 5 | 13 | 3 | 10 | 10 | 13 | 3 | 3 | 16 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
23 | 10 | 2 | 10 | 14 | 8 | 4 | 2 | 14 | 0 | 12 | 9 | 8 | 4 | 23 | 3 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
12 | 4 | 8 | 7 | 5 | 8 | 12 | 0 | 2 | 4 | 3 | 0 | 0 | 1 | 0 | 5 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
147 | 159 | 183 | 124 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
76 | 179 | 118 | 240 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
101 | 264 | 97 | 151 |
ND6 (size: 522 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
3 | 0 | 0 | 3 | 1 | 6 | 8 | 4 | 0 | 0 | 5 | 3 | 5 | 17 | 6 | 3 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
3 | 2 | 0 | 4 | 5 | 5 | 5 | 1 | 4 | 3 | 18 | 0 | 1 | 0 | 3 | 1 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
4 | 1 | 0 | 4 | 3 | 2 | 2 | 0 | 2 | 2 | 6 | 4 | 7 | 1 | 1 | 0 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
0 | 0 | 6 | 1 | 2 | 0 | 1 | 0 | 0 | 1 | 4 | 0 | 0 | 0 | 1 | 0 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
84 | 27 | 17 | 46 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
39 | 40 | 21 | 74 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
79 | 35 | 27 | 33 |
Total protein-coding genes (size: 11435 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
112 | 152 | 37 | 180 | 198 | 103 | 81 | 40 | 49 | 46 | 67 | 87 | 47 | 47 | 93 | 144 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
104 | 8 | 20 | 104 | 174 | 65 | 33 | 27 | 93 | 45 | 85 | 65 | 101 | 32 | 13 | 71 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
128 | 56 | 17 | 58 | 93 | 43 | 17 | 11 | 44 | 21 | 87 | 49 | 39 | 19 | 94 | 19 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
84 | 47 | 56 | 18 | 56 | 34 | 41 | 9 | 22 | 25 | 20 | 0 | 0 | 7 | 1 | 72 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
1051 | 1047 | 920 | 792 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
530 | 1070 | 679 | 1531 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
649 | 1577 | 702 | 882 |